PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G02970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 333aa    MW: 35498.2 Da    PI: 4.6281
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G02970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16241278136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg++
  OPUNC02G02970.1 241 CHHCGINAasTPMMRRGPDGPRTLCNACGLMWANKGTM 278
                      ****977777*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-7105140IPR010399Tify domain
PROSITE profilePS5132012.702105140IPR010399Tify domain
PfamPF062007.4E-10109139IPR010399Tify domain
PROSITE profilePS5101713.384166208IPR010402CCT domain
PfamPF062035.6E-16166208IPR010402CCT domain
PROSITE profilePS501149.249235283IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-12235288IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12239290No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15240281IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-14240284No hitNo description
PfamPF003202.6E-14241278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPAPAE EEAAAAAPAP LADEVDAEVE AMERYEQEQE QEYEEGEEGE  60
GDEEQEYEGG EGVPMDADAS ATVAAMDPHG EMVPVAGAEA GGGYPHVPSN TLTLSFQGEV  120
YVFESVSAER VQAVLLLLGG RELAPGSGSV PSSSAAYSKK MNFPHRMASL MRFREKRKER  180
NFDKKIRYTV RKEVALRMQR NRGQFTSSKS KAEEATSAIT SSEGSPNWGA VEGRPPSAAE  240
CHHCGINAAS TPMMRRGPDG PRTLCNACGL MWANKGTMRE VTKGPPVPLQ VVPAATNDVQ  300
NGIIEATGGE QQNSAVEEAV SAANGHESQS GIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.11e-171PREDICTED: GATA transcription factor 17 isoform X1
SwissprotQ6Z4331e-173GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0E0JVI60.0A0A0E0JVI6_ORYPU; Uncharacterized protein
STRINGORGLA02G0035000.11e-171(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-64ZIM-LIKE 2